Are you going to keep kernel and Device Tree at eMMC?
IF so just do all steps described here - Flashing Embedded Linux to iMX6 Modules
And then prepare another SD card with desired Root FS and change emmcargs
from
When i executed the update.sh script to the mount point of the SD card I got only one partition with the folders in the picture, is that OK ?
[upload|HUib+XXjFmhbY0vIhJDSrHBW8+0=]
[upload|BTT2DlzOWmnH6usVCekyY4gSgLA=]
When I executed the update.sh script to the mount point of the SD card I got only one partition with the folders in the picture, is that OK?
I guess that depends on what exactly you expect the update.sh script to be doing.
As stated in the above-mentioned legacy update procedure documentation the update.sh script just generates an update media for later use by run setupdate; run update on a module via U-Boot command shell which subsequently updates the on-module eMMC flash. Nothing more and nothing less.
If you do expect anything different then please start with stating what exactly it is you are trying to achieve. Please also state what exact hardware and software versions of things you are talking about.
BTW: Such screenshots are not really much useful. Much better would be textual output of either the commands you entered into any shells or resp. debug output.